MOMD:
Mouse Oral Microbiome Database
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MOMD Genome Explorer
Selected genome:
Providencia alcalifaciens
WMus003.1
Change genome:
Available genomes
1. Actinomyces bowdenii WMus004.1
2. Bacteroides acidifaciens 19428wH3_P2318
3. Bacteroides acidifaciens 8_33DSS_C5_S8
4. Citrobacter koseri 19428wH4_BL23
5. Dysgonomonas mossii 19428wE4_P11
6. Enterococcus gallinarum 19428wB3_C2
7. Enterococcus gallinarum ENT.1
8. Escherichia coli 19428wD4_HM13
9. Gemella palaticanis CIP106318T.1
10. Gemella sp. 19428wG2_WT2a
11. Gemella sp. GH3.1
12. Gemella sp. GL1.1
13. Granulicatella sp. 19428wC4_WM01
14. Jeotgalicoccus nanhaiensis 19428wE5_W307
15. Lactobacillus johnsonii 19428wE2_CC3
16. Lactobacillus murinus LAC.1
17. Ligilactobacillus murinus 19428wF2_HT12
18. Ligilactobacillus murinus 2_2BalbC1BO2_S2
19. Mammaliicoccus lentus 19428wC1_HT5
20. Mammaliicoccus lentus 19428wG1_AE2
21. Mammaliicoccus lentus 3_3BalbC2O2_S3
22. Mammaliicoccus sciuri 19428wE1_BL01
23. Mammaliicoccus sciuri ACT.1
24. Microbacterium paludicola 19428wA4_P1012
25. Micrococcus aloeverae 19428wE3_DK2
26. Micrococcus yunnanensis 19428wG4_IOV6
27. Muribacter muris 19428wC3_WT12
28. Muribacter muris 7_18CXCR221ANO_S7
29. Neisseria sp. 19428wB4_WF04
30. Parabacteroides goldsteinii 19428wG3_P14
31. Pasteurella sp. 19428wF3_WM03
32. Proteus mirabilis 19428wB5_irhom_Sw
33. Providencia alcalifaciens WMus003.1
34. Rothia nasimurium 19428wA5_irhom_31
35. Sanguibacter inulinus DSM100099.1
36. Shigella flexneri 19428wH2_1568
37. Staphylococcus arlettae 19428wH1_IOV5
38. Staphylococcus aureus 19428wD1_P36
39. Staphylococcus aureus 4_5BalbC4O2_S4
40. Staphylococcus aureus STF.1
41. Staphylococcus capitis GW2.1
42. Staphylococcus saprophyticus 19428wB1_WM06
43. Staphylococcus warneri 19428wF1_P912
44. Staphylococcus xylosus 19428wA1_WT6
45. Streptococcus acidominimus 19428wB2_HT4
46. Streptococcus acidominimus 6_8CXCR23O2_S6
47. Streptococcus cuniculi 19428wD2_WM131
48. Streptococcus danieliae 1_1BalbC1O2_S1
49. Streptococcus danieliae STR.1
50. Streptococcus sp. 19428wA2_WM07
51. Streptococcus sp. 19428wC2_LYSM12
52. Streptococcus sp. 19428wD3_AN2
from a total of 52 genomes
Available tools:
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PROKKA Annotation
NCBI Annotation
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Genome Info
Taxon Description
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PROKKA Genome Annotation:
contigs: 66
bases: 3,919,227 bps
CDS: 3,576
rRNA: 12
Repeat region:
tmRNA: 1
tRNA: 80
misc RNA:
Total features: 3,669
Total number of protein coding genes annotated/found:
3,576
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Items 1 - 20
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Molecule ^
PID/GenBank ID *^
Sequences
Size (NA/AA)
Range ^
Gene Product Name
SEQF5002|JADGLZ010000006.1
SEQF5002_02852
Genome Viewer
NA
AA
8757/2919
98864-90108
hypothetical protein
SEQF5002|JADGLZ010000010.1
SEQF5002_00103
Genome Viewer
NA
AA
8205/2735
129730-121526
hypothetical protein
SEQF5002|JADGLZ010000011.1
SEQF5002_00252
Genome Viewer
NA
AA
6849/2283
105402-112250
hypothetical protein
SEQF5002|JADGLZ010000011.1
SEQF5002_00255
Genome Viewer
NA
AA
6348/2116
115013-121360
hypothetical protein
SEQF5002|JADGLZ010000010.1
SEQF5002_00048
Genome Viewer
NA
AA
5739/1913
55873-61611
hypothetical protein
SEQF5002|JADGLZ010000013.1
SEQF5002_00452
Genome Viewer
NA
AA
5127/1709
33345-28219
Multifunctional conjugation protein TraI
SEQF5002|JADGLZ010000002.1
SEQF5002_01746
Genome Viewer
NA
AA
5040/1680
316837-311798
Alpha-2-macroglobulin
SEQF5002|JADGLZ010000009.1
SEQF5002_03628
Genome Viewer
NA
AA
4938/1646
153799-158736
hypothetical protein
SEQF5002|JADGLZ010000006.1
SEQF5002_02861
Genome Viewer
NA
AA
4440/1480
110720-106281
Chromosome partition protein MukB
SEQF5002|JADGLZ010000007.1
SEQF5002_03261
Genome Viewer
NA
AA
4224/1408
255129-259352
DNA-directed RNA polymerase subunit beta'
SEQF5002|JADGLZ010000007.1
SEQF5002_03260
Genome Viewer
NA
AA
4029/1343
250991-255019
DNA-directed RNA polymerase subunit beta
SEQF5002|JADGLZ010000009.1
SEQF5002_03532
Genome Viewer
NA
AA
3993/1331
42943-46935
hypothetical protein
SEQF5002|JADGLZ010000001.1
SEQF5002_01414
Genome Viewer
NA
AA
3984/1328
745599-749582
Bifunctional protein PutA
SEQF5002|JADGLZ010000001.1
SEQF5002_01018
Genome Viewer
NA
AA
3900/1300
358381-354482
hypothetical protein
SEQF5002|JADGLZ010000002.1
SEQF5002_01774
Genome Viewer
NA
AA
3888/1296
351028-347141
Phosphoribosylformylglycinamidine synthase
SEQF5002|JADGLZ010000005.1
SEQF5002_02681
Genome Viewer
NA
AA
3795/1265
215605-211811
hypothetical protein
SEQF5002|JADGLZ010000004.1
SEQF5002_02286
Genome Viewer
NA
AA
3771/1257
107499-111269
Translocation and assembly module subunit TamB
SEQF5002|JADGLZ010000001.1
SEQF5002_00943
Genome Viewer
NA
AA
3738/1246
275733-271996
hypothetical protein
SEQF5002|JADGLZ010000010.1
SEQF5002_00012
Genome Viewer
NA
AA
3684/1228
13534-17217
Methionine synthase
SEQF5002|JADGLZ010000003.1
SEQF5002_01964
Genome Viewer
NA
AA
3684/1228
112190-108507
hypothetical protein
Items 1 - 20
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* Click GI, UID, Gene Product to go to NCBI record
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Copyright 2020 Forsyth Institute
Page last updated: July 7, 2021 08:39:35
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